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Polymorphic
DNA Technologies delivers quality service at each step of the
SNP discovery and SNP scoring process.
Use
of Sanger Sequencing in SNP Scoring
The use of DNA sequencing itself substantially
contributes to the quality of our service.
The
method we use to design a SNP genotyping assay always generates
an amplicon that can be sequenced. There is never a question
about the "assay compatibility" of any polymorphic
locus. We can design and run assays for any SNP.
DNA
sequencing is the accepted "Gold Standard" in
DNA analysis. Most SNPs are discovered by DNA sequencing,
which is considered an accurate, proven and reliable methodology.
Since
the surrounding DNA sequence context is provided, our customers
can be certain that the proper base has been evaluated.
Use
of Sanger Sequencing in SNP Discovery
As mentioned above, DNA sequencing is the accepted "Gold
Standard" in DNA analysis. Most SNPs are discovered by DNA
sequencing, which is considered an accurate, proven and
reliable methodology. To ensure accuracy and sensitivity,
only data from the high resolution, high quality region
of the DNA sequencing run are used in our discovery service.
Independent
Quality Checks
To confirm the quality of a genotyping result, a sequence
alignment is performed. Additionally, the sequence data
must pass a threshold signal intensity and regional PHRED
score to be considered a quality result. The nucleotide
of interest and the surrounding bases must pass these quality
checks.
Method
Confirmation
Polymorphic routinely performs in-house studies analyzing
SNPs among numerous family members across three generations.
These genotyping results consistently show a Mendelian pattern
of inheritance among the family members, confirming the
accuracy and validity of our methods.
Automated
Sample Handling
Polymorphic's automated systems ensure reliable sample handling
throughout the SNP discovery and genotyping process. Human
error is minimized by the use of robotics. Sample plates
can only be loaded onto our DNA sequencing instrument in
their correct orientation, preventing errors. Our liquid
handling instruments perform plate to plate transfers, preventing
inappropriate sample delivery. Our tests have shown sample
carryover of less than 1 part per million. Samples are processed
in a clean room environment.
Disclaimer
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